HL_8ZHC_096

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_096 not in the Motif Atlas

Geometric match to HL_8P9A_210

Geometric discrepancy: 0.0509

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZHC|1|S2|C|937
8ZHC|1|S2|G|938
8ZHC|1|S2|A|939
8ZHC|1|S2|A|940
8ZHC|1|S2|A|941
8ZHC|1|S2|G|942

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Se

Small ribosomal subunit protein eS26B