HL_8ZHC_102

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUUGAGAGCUC

Length

12 nucleotides

Bulged bases

8ZHC|1|S2|G|1241, 8ZHC|1|S2|A|1242, 8ZHC|1|S2|G|1243, 8ZHC|1|S2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|S2|G|1237
8ZHC|1|S2|A|1238
8ZHC|1|S2|U|1239
8ZHC|1|S2|U|1240
8ZHC|1|S2|G|1241
8ZHC|1|S2|A|1242
8ZHC|1|S2|G|1243
8ZHC|1|S2|A|1244
8ZHC|1|S2|G|1245
8ZHC|1|S2|C|1246
8ZHC|1|S2|U|1247
8ZHC|1|S2|C|1248

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31