HL_8ZHC_105

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8ZHC|1|S2|U|1361, 8ZHC|1|S2|U|1362, 8ZHC|1|S2|U|1363

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_105 not in the Motif Atlas

Geometric match to HL_8CRE_038

Geometric discrepancy: 0.3718

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8ZHC|1|S2|C|1359
8ZHC|1|S2|A|1360
8ZHC|1|S2|U|1361
8ZHC|1|S2|U|1362
8ZHC|1|S2|U|1363
8ZHC|1|S2|G|1364

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SI

Small ribosomal subunit protein eS19A