HL_8ZHC_107

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGCCGAGAGGUC

Length

12 nucleotides

Bulged bases

8ZHC|1|S2|G|1499, 8ZHC|1|S2|C|1501, 8ZHC|1|S2|G|1502, 8ZHC|1|S2|A|1503, 8ZHC|1|S2|G|1504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|S2|G|1498
8ZHC|1|S2|G|1499
8ZHC|1|S2|C|1500
8ZHC|1|S2|C|1501
8ZHC|1|S2|G|1502
8ZHC|1|S2|A|1503
8ZHC|1|S2|G|1504
8ZHC|1|S2|A|1505
8ZHC|1|S2|G|1506
8ZHC|1|S2|G|1507
8ZHC|1|S2|U|1508
8ZHC|1|S2|C|1509

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A