HL_8ZHC_112
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAGCCCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8ZHC|1|Ta|G|15, 8ZHC|1|Ta|C|16, 8ZHC|1|Ta|C|17, 8ZHC|1|Ta|C|18, 8ZHC|1|Ta|G|19, 8ZHC|1|Ta|G|20, 8ZHC|1|Ta|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_112 not in the Motif Atlas
- Homologous match to HL_7U2I_103
- Geometric discrepancy: 0.2118
- The information below is about HL_7U2I_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|Ta|C|13
8ZHC|1|Ta|A|14
8ZHC|1|Ta|G|15
8ZHC|1|Ta|C|16
8ZHC|1|Ta|C|17
8ZHC|1|Ta|C|18
8ZHC|1|Ta|G|19
8ZHC|1|Ta|G|20
8ZHC|1|Ta|U|21
8ZHC|1|Ta|A|22
8ZHC|1|Ta|G|23
Current chains
- Chain Ta
- tRNA (77-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- Large ribosomal subunit protein uL5B
- Chain Lq
- Large ribosomal subunit protein eL42A
Coloring options: