HL_8ZTU_018

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

8ZTU|1|A|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZTU_018 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1121

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZTU|1|A|G|963
8ZTU|1|A|A|964
8ZTU|1|A|U|965
8ZTU|1|A|2MG|966
8ZTU|1|A|5MC|967
8ZTU|1|A|A|968
8ZTU|1|A|A|969
8ZTU|1|A|C|970
8ZTU|1|A|G|971
8ZTU|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain Y

Transfer RNA; tRNA