HL_8ZTU_073

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8ZTU|1|a|A|1780, 8ZTU|1|a|U|1781, 8ZTU|1|a|U|1782, 8ZTU|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZTU_073 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0835

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8ZTU|1|a|U|1777
8ZTU|1|a|U|1778
8ZTU|1|a|U|1779
8ZTU|1|a|A|1780
8ZTU|1|a|U|1781
8ZTU|1|a|U|1782
8ZTU|1|a|A|1783
8ZTU|1|a|A|1784
8ZTU|1|a|A|1785
8ZTU|1|a|A|1786
8ZTU|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain W

PepNL

Chain c

50S ribosomal protein L2