HL_8ZTU_076

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8ZTU|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZTU_076 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.2618

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8ZTU|1|a|G|1910
8ZTU|1|a|PSU|1911
8ZTU|1|a|A|1912
8ZTU|1|a|A|1913
8ZTU|1|a|C|1914
8ZTU|1|a|3TD|1915
8ZTU|1|a|A|1916
8ZTU|1|a|PSU|1917
8ZTU|1|a|A|1918
8ZTU|1|a|A|1919
8ZTU|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Transfer RNA; tRNA