HL_9A9V_003

3D structure

PDB id

9A9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

All-atom model of the Rev Response RNA Element of HIV-1 generated by mutagenesis- and FRET-guided FARFAR2 model selection.

Experimental method

HYBRID

Resolution

Loop

Sequence

AACAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9A9V_003 not in the Motif Atlas

Geometric match to HL_4Y1M_003

Geometric discrepancy: 0.1632

The information below is about HL_4Y1M_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9A9V|1|A|A|113
9A9V|1|A|A|114
9A9V|1|A|C|115
9A9V|1|A|A|116
9A9V|1|A|A|117
9A9V|1|A|U|118

Current chains

Chain A

RNA (234-MER)

Nearby chains