HL_9AUS_001

3D structure

PDB id

9AUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of loop-closed dumbbell RNA bridged by glycine

Experimental method

X-RAY DIFFRACTION

Resolution

2.07 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

9AUS|1|C|A|6, 9AUS|1|C|A|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AUS_001 not in the Motif Atlas

Geometric match to HL_6DB9_001

Geometric discrepancy: 0.0769

The information below is about HL_6DB9_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_22584.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

26

Unit IDs

9AUS|1|C|G|5
9AUS|1|C|A|6
9AUS|1|C|A|7
9AUS|1|C|A|8
9AUS|1|C|C|9
9AUS|1|C|A|10
9AUS|1|C|C|11

Current chains

Chain C

Loop-closed dumbbell RNA bridged by glycine

Nearby chains

Chain A

Fab BL3-6 heavy chain

Chain B

Fab BL3-6 light chain