RNA 3D Hub //

Motif HL_22584.6 Version HL_22584.6 of this group appears in releases 3.98 to 3.99

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-52-32-4
1 HL_3IGI_0093IGI0.58631Other HLAGroup II catalytic intron D1-D4-3C368G369A371C372G373cWWtSW
2 HL_9DFE_0639DFE0.72601Other HL1A LSU rRNAC2701U2702C2704A2705G2706cWWcSH
3 HL_6OL3_0016OL30.56272Other HLC VA RNAG64A66C68C69C70cWWntSW
4 HL_8T29_0018T290.11832Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G35A37C39A40C41cWWtSW
5 HL_8VMB_0018VMB0.12082Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG18A20C22A23C24cWWntSW
6 HL_9C75_0029C750.11142Fab BL3-6 binding hairpin with tSWRRev Response ElementG49A51C53A54C55cWWtSW
7 HL_7SZU_0017SZU0.13472Fab BL3-6 binding hairpin with tSWRRNA aptamerG35A37C39A40C41cWWtSW
8 HL_8UIW_0018UIW0.12242Fab BL3-6 binding hairpin with tSWNazaaromatic riboswitch aptamer (yjdF RNA)G29A31C33A34C35cWWtSW
9 HL_6X5M_0026X5M0.12982Fab BL3-6 binding hairpin with tSWrggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
10 HL_8D29_0018D290.10082Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
11 HL_7MLX_0027MLX0.13062Fab BL3-6 binding hairpin with tSWRRNA (65-MER)G40A42C44A45C46cWWtSW
12 HL_8VMA_0038VMA0.15342Fab BL3-6 binding hairpin with tSWCEnterovirus 5' cloverleaf cis-acting replication elementG60A62C64A65C66cWWtSW
13 HL_8DP3_0018DP30.12002Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG20A22C24A25C26cWWtSW
14 HL_9C2K_0049C2K0.09222Fab BL3-6 binding hairpin with tSWRRev Response ElementG49A51C53A54C55cWWtSW
15 HL_9C2K_0029C2K0.08302Fab BL3-6 binding hairpin with tSWCRev Response ElementG49A51C53A54C55cWWtSW
16 HL_9E7E_0029E7E0.08802Fab BL3-6 binding hairpin with tSWCRev Response Element SLII A31C/G39CG49A51C53A54C55cWWtSW
17 HL_8VM9_0068VM90.00002Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG57A59C61A62C63cWWtSW
18 HL_8D29_0038D290.05782Fab BL3-6 binding hairpin with tSWJRNA (34-MER)G13A15C17A18C19cWWtSW
19 HL_8D29_0028D290.05612Fab BL3-6 binding hairpin with tSWFRNA (34-MER)G13A15C17A18C19cWWtSW
20 HL_6DB9_0016DB90.06162Fab BL3-6 binding hairpin with tSWRRNA (60-MER)G23A25C27A28C29cWWtSW
21 HL_8VM8_0038VM80.07532Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG63A65C67A68C69cWWtSW
22 HL_4KZD_0014KZD0.08052Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39C41A42C43cWWtSW
23 HL_9AUS_0029AUS0.08422Fab BL3-6 binding hairpin with tSWRLoop-closed dumbbell RNA bridged by glycineG5A7C9A10C11cWWtSW
24 HL_9DN4_0029DN40.08972Fab BL3-6 binding hairpin with tSWFRNA (20-mer)G8A10C12A13C14cWWtSW
25 HL_8DK7_0018DK70.07782Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
26 HL_3IVK_0033IVK0.10122Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61C63A64C65cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC23
CGAACG1
CUCCAG1
GAACCCC1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA23
GAAC1
UCCA1
AACCC1

Release history

Release3.983.99
Date2025-06-182025-07-16
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (23)
  • Other HL (3)
    • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.03 | Avg 0.22 | Max 0.77
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