HL_9AX7_049

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9AX7|1|a|U|545, 9AX7|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX7_049 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2469

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9AX7|1|a|C|544
9AX7|1|a|U|545
9AX7|1|a|U|546
9AX7|1|a|A|547
9AX7|1|a|G|548
9AX7|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains