3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
9AX7|1|a|A|1808
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AX7_076 not in the Motif Atlas
Homologous match to HL_5J7L_179
Geometric discrepancy: 0.0862
The information below is about HL_5J7L_179
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_04783.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
9

Unit IDs

9AX7|1|a|C|1806
9AX7|1|a|G|1807
9AX7|1|a|A|1808
9AX7|1|a|A|1809
9AX7|1|a|A|1810
9AX7|1|a|G|1811

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L2
Chain w
50S ribosomal protein L28

Coloring options:


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