3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
9AX7|1|a|G|2751, 9AX7|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AX7_095 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0689
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

9AX7|1|a|C|2745
9AX7|1|a|U|2746
9AX7|1|a|G|2747
9AX7|1|a|A|2748
9AX7|1|a|A|2749
9AX7|1|a|A|2750
9AX7|1|a|G|2751
9AX7|1|a|C|2752
9AX7|1|a|A|2753
9AX7|1|a|U|2754
9AX7|1|a|C|2755
9AX7|1|a|U|2756
9AX7|1|a|A|2757
9AX7|1|a|A|2758
9AX7|1|a|G|2759

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain i
50S ribosomal protein L13

Coloring options:


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