HL_9AX8_004

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9AX8|1|A|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2173

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9AX8|1|A|U|137
9AX8|1|A|U|138
9AX8|1|A|U|139
9AX8|1|A|C|140
9AX8|1|A|G|141
9AX8|1|A|A|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23