HL_9AX8_028

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

9AX8|1|A|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_028 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.5292

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9AX8|1|A|C|1092
9AX8|1|A|G|1093
9AX8|1|A|U|1094
9AX8|1|A|A|1095
9AX8|1|A|A|1096
9AX8|1|A|U|1097
9AX8|1|A|A|1098
9AX8|1|A|G|1099

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain Y

50S ribosomal protein L36