HL_9AX8_050

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGACGCCAGUC

Length

11 nucleotides

Bulged bases

9AX8|1|A|C|2146, 9AX8|1|A|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_050 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2169

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9AX8|1|A|G|2140
9AX8|1|A|G|2141
9AX8|1|A|A|2142
9AX8|1|A|C|2143
9AX8|1|A|G|2144
9AX8|1|A|C|2145
9AX8|1|A|C|2146
9AX8|1|A|A|2147
9AX8|1|A|G|2148
9AX8|1|A|U|2149
9AX8|1|A|C|2150

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11