HL_9AX8_103
3D structure
- PDB id
- 9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9AX8|1|y|C|15, 9AX8|1|y|C|16, 9AX8|1|y|U|17, 9AX8|1|y|G|18, 9AX8|1|y|G|19, 9AX8|1|y|U|20, 9AX8|1|y|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AX8_103 not in the Motif Atlas
- Homologous match to HL_6GSL_208
- Geometric discrepancy: 0.3937
- The information below is about HL_6GSL_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9AX8|1|y|C|12
9AX8|1|y|A|13
9AX8|1|y|G|14
9AX8|1|y|C|15
9AX8|1|y|C|16
9AX8|1|y|U|17
9AX8|1|y|G|18
9AX8|1|y|G|19
9AX8|1|y|U|20
9AX8|1|y|A|21
9AX8|1|y|G|22
Current chains
- Chain y
- P-site tRNA-fMet M1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: