HL_9AXU_007

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

9AXU|1|2|G|225, 9AXU|1|2|A|226, 9AXU|1|2|G|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

9AXU|1|2|G|223
9AXU|1|2|U|224
9AXU|1|2|G|225
9AXU|1|2|A|226
9AXU|1|2|G|227
9AXU|1|2|A|228
9AXU|1|2|A|229
9AXU|1|2|C|230
9AXU|1|2|C|231

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL4A

Chain k

Large ribosomal subunit protein uL24