RNA 3D Hub //

9AXU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9AXU_0011/2/38:45No text annotation
HL_48677.1
HL_9AXU_0021/2/69:74No text annotation
HL_51020.1
HL_9AXU_0031/2/90:96No text annotation
HL_76371.1
HL_9AXU_0041/2/133:141No text annotation
HL_63894.1
HL_9AXU_0051/2/201:208T-loop with 1 bulged base
HL_13999.1
HL_9AXU_0061/2/215:219No text annotation
HL_75660.6
HL_9AXU_0071/2/223:231T-loop with unstacked turn
HL_27670.3
HL_9AXU_0081/2/286:295No text annotation
HL_63894.1
HL_9AXU_0091/2/311:320No text annotation
HL_00911.1
HL_9AXU_0101/2/365:370GNRA
HL_34789.1
HL_9AXU_0111/2/390:395GNRA
HL_34789.1
HL_9AXU_0121/2/623:629No text annotation
HL_13184.1
HL_9AXU_0131/2/665:674T-loop with 2 stacked bulged bases
HL_33597.1
HL_9AXU_0141/2/712:720No text annotation
HL_00824.1
HL_9AXU_0151/2/734:739GNRA
HL_34789.1
HL_9AXU_0161/2/759:765No text annotation
HL_9AXU_0171/2/876:881GNRA
HL_37569.1
HL_9AXU_0181/2/908:917No text annotation
HL_50204.1
HL_9AXU_0191/2/942:950No text annotation
HL_79004.1
HL_9AXU_0201/2/990:995No text annotation
HL_27530.1
HL_9AXU_0221/2/1108:1115T-loop related
HL_63894.1
HL_9AXU_0231/2/1157:1163GNRA
HL_34789.1
HL_9AXU_0241/2/1179:1186No text annotation
HL_47171.1
HL_9AXU_0271/2/1437:1442GNRA
HL_34789.1
HL_9AXU_0281/2/1496:1504T-loop with 2 stacked bulged bases
HL_33597.1
HL_9AXU_0291/2/1540:1546Pseudoknot geometry with 3' bulge
HL_49081.1
HL_9AXU_0301/2/1578:1583GNRA variation
HL_34789.1
HL_9AXU_0321/2/1634:1643No text annotation
HL_77449.1
HL_9AXU_0331/2/1669:1674GNRA
HL_34789.1
HL_9AXU_0341/2/1715:1723No text annotation
HL_68642.1
HL_9AXU_0351/2/1759:1765No text annotation
HL_97067.1
HL_9AXU_0371/2/1833:1837No text annotation
HL_90436.1
HL_9AXU_0381/2/1899:1906No text annotation
HL_28592.1
HL_9AXU_0391/2/1917:1923GNRA
HL_34789.1
HL_9AXU_0401/2/1978:1983UNCG
HL_61337.1
HL_9AXU_0411/2/2198:2202Mini UNCG related
geometric
HL_6AJK_001
NA
HL_9AXU_0421/2/2223:2233No text annotation
HL_87681.1
HL_9AXU_0431/2/2252:2258GNRA
HL_34789.1
HL_9AXU_0441/2/2308:2313GNRA
HL_34789.1
HL_9AXU_0461/2/2380:2388No text annotation
HL_77449.1
HL_9AXU_0471/2/2457:2466No text annotation
HL_78372.1
HL_9AXU_0491/2/2659:2672No text annotation
HL_33359.1
HL_9AXU_0501/2/2711:2719No text annotation
HL_11974.1
HL_9AXU_0511/2/2728:2740No text annotation
HL_02042.1
HL_9AXU_0521/2/2768:2776No text annotation
HL_9AXU_0531/2/2788:2795Pseudoknot geometry
HL_52651.1
HL_9AXU_0541/2/2819:2827No text annotation
HL_15296.1
HL_9AXU_0551/2/2839:2844GNRA
HL_34789.1
HL_9AXU_0561/2/2871:2879Pseudoknot geometry
HL_52651.1
HL_9AXU_0581/2/2991:2999No text annotation
HL_34245.1
HL_9AXU_0591/2/3015:3021No text annotation
HL_48677.1
HL_9AXU_0601/2/3058:3063GNRA
HL_34789.1
HL_9AXU_0611/2/3121:3126GNRA
HL_34789.1
HL_9AXU_0621/2/3164:3169Ribsomal LSU H95
HL_12125.1
HL_9AXU_0631/2/3206:3220No text annotation
HL_53269.1
HL_9AXU_0651/2/3340:3347No text annotation
HL_31089.1
HL_9AXU_0661/2/3404:3412No text annotation
HL_37889.1
HL_9AXU_0681/3/32:45No text annotation
HL_01182.1
HL_9AXU_0691/3/36:41No text annotation
HL_59381.1
HL_9AXU_0701/3/86:91GNRA
HL_34789.1
HL_9AXU_0711/4/55:64Pseudoknot with intercalation
HL_17803.1
HL_9AXU_0721/4/77:97No text annotation
HL_68571.1
HL_9AXU_0731/4/116:122No text annotation
HL_13184.1
HL_9AXU_0741/4/131:138No text annotation

Problematic loops

#loop idProblemSequence
HL_9AXU_021No text annotation
HL_9AXU_075No text annotation
HL_9AXU_025No text annotation
HL_9AXU_026GNRA wlth tandem sheared
HL_9AXU_031No text annotation
HL_9AXU_036No text annotation
HL_9AXU_045No text annotation
HL_9AXU_048No text annotation
HL_9AXU_057No text annotation
HL_9AXU_064Externally structured
HL_9AXU_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9AXU_0011/2/7:8,
1/4/158:160		Single bulged U
IL_97561.1
IL_9AXU_0021/2/13:15,
1/4/152:153		Single bulged U
IL_97561.1
IL_9AXU_0031/2/27:28,
1/2/56:58		No text annotation
IL_15011.1
IL_9AXU_0041/2/31:38,
1/2/45:53		tSH-tHW-tHH-tHS
IL_93502.1
IL_9AXU_0051/2/82:89,
1/2/97:103		8x7 Sarcin-Ricin; G-bulge
IL_53348.1
IL_9AXU_0061/2/123:124,
1/2/150:155		No text annotation
IL_10396.1
IL_9AXU_0071/2/125:127,
1/2/147:149		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0081/2/167:172,
1/2/263:268		No text annotation
IL_95349.1
IL_9AXU_0121/2/196:198,
1/2/211:212		Single bulged U
IL_97561.1
IL_9AXU_0131/2/345:347,
1/4/33:34		Single bulged A
IL_14190.1
IL_9AXU_0141/2/384:387,
1/2/398:411		No text annotation
IL_44923.1
IL_9AXU_0151/2/412:418,
1/4/21:27		No text annotation
IL_22311.1
IL_9AXU_0171/2/523:524,
1/2/601:603		Single bulged A
IL_14190.1
IL_9AXU_0181/2/528:536,
1/2/590:597		No text annotation
IL_9AXU_0191/2/536:538,
1/2/588:590		Isolated cWH basepair
IL_10892.1
IL_9AXU_0201/2/693:695,
1/2/824:826		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0211/2/705:709,
1/2/723:727		No text annotation
IL_87030.1
IL_9AXU_0221/2/752:755,
1/2/769:773		No text annotation
IL_45790.1
IL_9AXU_0231/2/780:781,
1/2/811:813		Single bulged A
IL_14190.1
IL_9AXU_0241/2/783:784,
1/2/807:809		Minor groove platform related
IL_34520.1
IL_9AXU_0251/2/835:837,
1/2/970:972		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0261/2/837:841,
1/2/963:970		No text annotation
IL_73855.1
IL_9AXU_0271/2/860:861,
1/2/927:929		Single bulged A
IL_14190.1
IL_9AXU_0281/2/865:866,
1/2/891:893		Single bulged G
IL_28408.1
IL_9AXU_0291/2/866:870,
1/2/887:891		Triple sheared
IL_15190.1
IL_9AXU_0301/2/901:904,
1/2/920:922		No text annotation
IL_36931.1
IL_9AXU_0311/2/905:907,
1/2/918:919		Single bulged U
IL_97561.1
IL_9AXU_0321/2/939:941,
1/2/951:955		No text annotation
IL_89509.1
IL_9AXU_0331/2/986:988,
1/2/997:999		Isolated non-canonical cWW pair
IL_71625.1
IL_9AXU_0341/2/1001:1002,
1/2/1142:1144		Single stack bend
IL_15011.1
IL_9AXU_0351/2/1009:1013,
1/2/1134:1135		No text annotation
IL_25463.2
IL_9AXU_0361/2/1015:1017,
1/2/1131:1132		Single bulged G
IL_28408.1
IL_9AXU_0371/2/1023:1029,
1/2/1084:1090		7x7 Sarcin-Ricin with intercalated A; G-bulge
IL_94128.1
IL_9AXU_0381/2/1029:1030,
1/2/1082:1084		Minor groove platform
IL_34520.1
IL_9AXU_0391/2/1031:1036,
1/2/1078:1081		C-loop with bulged stacked A's
IL_16301.1
IL_9AXU_0401/2/1038:1043,
1/2/1071:1076		No text annotation
IL_95349.1
IL_9AXU_0421/2/1101:1103,
1/2/1119:1121		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0431/2/1106:1108,
1/2/1115:1116		Single bulged A
IL_28408.1
IL_9AXU_0441/2/1151:1153,
1/2/1167:1169		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0451/2/1198:1202,
1/2/1359:1363		UAA/GAN
IL_08938.1
IL_9AXU_0461/2/1204:1211,
1/2/1356:1357		SSU/LSU pseudoknot
IL_07396.1
IL_9AXU_0471/2/1211:1213,
1/2/1355:1356		Single bulged U
IL_97561.1
IL_9AXU_0481/2/1218:1225,
1/2/1345:1350		No text annotation
IL_39054.1
IL_9AXU_0491/2/1225:1236,
1/2/1330:1345		No text annotation
IL_34501.1
IL_9AXU_0501/2/1238:1240,
1/2/1327:1328		Single bulged U
IL_97561.1
IL_9AXU_0531/2/1410:1412,
1/2/1462:1465		No text annotation
IL_10892.1
IL_9AXU_0541/2/1419:1421,
1/2/1454:1455		Single bulged A
IL_97561.1
IL_9AXU_0551/2/1422:1429,
1/2/1449:1453		Kink-turn
IL_90775.1
IL_9AXU_0561/2/1432:1434,
1/2/1445:1446		Single bulged U
IL_97561.1
IL_9AXU_0571/2/1478:1484,
1/2/2442:2447		7x6 Sarcin-Ricin; G-bulge
IL_02666.1
IL_9AXU_0581/2/1526:1529,
1/2/1890:1891		Major groove platform; stack outside cWW
IL_74641.1
IL_9AXU_0591/2/1535:1539,
1/2/1547:1549		C-loop
IL_06671.1
IL_9AXU_0601/2/1566:1570,
1/2/1620:1625		UAA/GAN
IL_08938.1
IL_9AXU_0611/2/1653:1656,
1/2/1879:1881		No text annotation
IL_75527.1
IL_9AXU_0621/2/1658:1659,
1/2/1874:1877		No text annotation
IL_71421.1
IL_9AXU_0631/2/1680:1684,
1/2/1847:1851		Triple sheared
IL_15190.1
IL_9AXU_0641/2/1696:1698,
1/2/1827:1829		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0651/2/1704:1705,
1/2/1819:1821		Single bulged C
IL_05642.1
IL_9AXU_0661/2/1705:1706,
1/2/1817:1819		Single stack bend
IL_15011.1
IL_9AXU_0671/2/1729:1733,
1/2/1787:1792		No text annotation
IL_25943.1
IL_9AXU_0681/2/1737:1746,
1/2/1778:1783		No text annotation
IL_9AXU_0691/2/1751:1757,
1/2/1767:1773		No text annotation
IL_93476.1
IL_9AXU_0701/2/1938:1944,
1/2/2434:2437		No text annotation
IL_89862.1
IL_9AXU_0711/2/1950:1952,
1/2/2426:2428		No text annotation
IL_10432.1
IL_9AXU_0721/2/1953:1956,
1/2/2424:2425		Major groove platform; stack outside cWW
IL_74641.1
IL_9AXU_0731/2/1953:1961,
1/2/2421:2425		No text annotation
IL_80252.1
IL_9AXU_0741/2/1956:1961,
1/2/2421:2424		No text annotation
IL_28217.1
IL_9AXU_0751/2/1973:1978,
1/2/1983:1989		No text annotation
IL_20700.1
IL_9AXU_0761/2/1995:1997,
1/2/2194:2196		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_0771/2/2002:2004,
1/2/2186:2189		No text annotation
IL_16315.1
IL_9AXU_0781/2/2216:2217,
1/2/2411:2413		Single bulged A
IL_14190.1
IL_9AXU_0791/2/2244:2249,
1/2/2261:2268		No text annotation
IL_14684.1
IL_9AXU_0801/2/2284:2287,
1/2/2333:2334		Minor groove platform, major groove intercalation
IL_73108.1
IL_9AXU_0811/2/2288:2289,
1/2/2329:2332		Major groove intercalation
IL_71421.1
IL_9AXU_0821/2/2292:2305,
1/2/2316:2326		No text annotation
IL_9AXU_0831/2/2364:2365,
1/2/2395:2398		No text annotation
IL_24886.1
IL_9AXU_0841/2/2365:2376,
1/2/2392:2395		No text annotation
IL_84014.1
IL_9AXU_0851/2/2479:2482,
1/2/3081:3083		No text annotation
IL_75527.1
IL_9AXU_0861/2/2484:2486,
1/2/3076:3079		No text annotation
IL_80025.1
IL_9AXU_0871/2/2497:2499,
1/2/2906:2907		Single bulged U
IL_97561.1
IL_9AXU_0881/2/2500:2501,
1/2/2902:2905		Minor groove platform
IL_34520.1
IL_9AXU_0891/2/2511:2513,
1/2/2699:2702		No text annotation
IL_87316.1
IL_9AXU_0901/2/2616:2622,
1/2/2679:2682		No text annotation
IL_52092.1
IL_9AXU_0911/2/2709:2710,
1/2/2720:2722		Single bulged A
IL_14190.1
IL_9AXU_0921/2/2761:2763,
1/2/2781:2785		No text annotation
IL_14250.1
IL_9AXU_0931/2/2809:2811,
1/2/2835:2836		Single bulged A
IL_14190.1
IL_9AXU_0941/2/2813:2816,
1/2/2830:2833		Tandem non-canonical cWW pairs
IL_15225.1
IL_9AXU_0951/2/2865:2868,
1/2/2882:2883		Single stack bend
IL_15011.1
IL_9AXU_0961/2/2918:2925,
1/2/2953:2962		No text annotation
IL_9AXU_0971/2/2930:2934,
1/2/2944:2948		No text annotation
IL_87767.1
IL_9AXU_0981/2/2971:2972,
1/2/3044:3046		No text annotation
IL_46637.1
IL_9AXU_0991/2/2974:2976,
1/2/3038:3042		Isolated non-canonical cWW with bulges
IL_68118.1
IL_9AXU_1001/2/2976:2977,
1/2/3035:3038		No text annotation
IL_44609.1
IL_9AXU_1011/2/2984:2986,
1/2/3007:3009		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_1021/2/2984:2987,
1/2/3004:3009		No text annotation
IL_07469.3
IL_9AXU_1031/2/2986:2987,
1/2/3004:3007		Major groove platform with intercalation
IL_94991.1
IL_9AXU_1041/2/2989:2990,
1/2/3000:3002		Multiple bulged bases
IL_78536.1
IL_9AXU_1051/2/3013:3015,
1/2/3021:3023		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_1061/2/3055:3056,
1/2/3065:3067		No text annotation
IL_14190.1
IL_9AXU_1071/2/3100:3103,
1/2/3235:3240		Double sheared
IL_58355.1
IL_9AXU_1081/2/3108:3110,
1/2/3136:3138		Isolated non-canonical cWW pair
IL_71625.1
IL_9AXU_1091/2/3114:3121,
1/2/3126:3132		8x7 Sarcin-Ricin; G-bulge
IL_62167.1
IL_9AXU_1101/2/3143:3147,
1/2/3187:3190		Major groove minor groove platform with tHH
IL_06671.1
IL_9AXU_1111/2/3150:3155,
1/2/3180:3184		No text annotation
IL_98200.1
IL_9AXU_1121/2/3159:3160,
1/2/3173:3176		No text annotation
IL_44609.1
IL_9AXU_1131/2/3199:3204,
1/2/3222:3227		No text annotation
IL_74322.1
IL_9AXU_1141/2/3271:3273,
1/2/3311:3312		Single bulged A
IL_97561.1
IL_9AXU_1151/2/3274:3291,
1/2/3294:3310		No text annotation
IL_9AXU_1161/2/3325:3329,
1/2/3358:3360		No text annotation
IL_62925.1
IL_9AXU_1171/2/3401:3404,
1/2/3412:3415		Tandem non-canonical cWW pairs
IL_71194.1
IL_9AXU_1181/2/3419:3421,
1/2/3488:3489		Single bulged U
IL_97561.1
IL_9AXU_1191/2/3425:3426,
1/2/3482:3484		Single bulged U
IL_97561.1
IL_9AXU_1201/2/3429:3431,
1/2/3474:3479		No text annotation
IL_00086.1
IL_9AXU_1211/2/3433:3438,
1/2/3468:3472		No text annotation
IL_48489.1
IL_9AXU_1221/2/3441:3443,
1/2/3464:3465		No text annotation
IL_97561.1
IL_9AXU_1231/2/3443:3446,
1/2/3461:3464		Double sheared; A in syn
IL_58355.1
IL_9AXU_1251/3/15:16,
1/3/62:64		Single bulged A
IL_14190.1
IL_9AXU_1261/3/21:27,
1/3/52:57		Minor groove platform related
IL_41504.1
IL_9AXU_1271/3/28:29,
1/3/48:51		Major groove minor groove platform; mini C-loop
IL_73108.1
IL_9AXU_1281/3/32:36,
1/3/41:45		No text annotation
IL_58103.12
IL_9AXU_1291/3/71:78,
1/3/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_62167.1
IL_9AXU_1301/3/82:85,
1/3/92:94		Isolated non-canonical cWW pair
IL_01003.1
IL_9AXU_1331/4/72:74,
1/4/101:104		Isolated non-canonical cWW pair
IL_68118.1
IL_9AXU_1321/4/76:77,
1/4/97:99		Single bulged U
IL_97561.1

Problematic loops

#loop idProblemSequence
IL_9AXU_009No text annotation
IL_9AXU_010No text annotation
IL_9AXU_011Partly complementary
IL_9AXU_016No text annotation
IL_9AXU_041No text annotation
IL_9AXU_051No text annotation
IL_9AXU_052No text annotation
IL_9AXU_124Isolated non-canonical cWW pair
IL_9AXU_131Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9AXU_0011/2/113:123,
1/2/155:164,
1/2/271:275		No text annotation
J3_69230.1
J3_9AXU_0021/2/113:124,
1/2/150:164,
1/2/271:275		No text annotation
J3_98114.1
J3_9AXU_0031/2/188:196,
1/2/212:221,
1/2/233:240		No text annotation
J3_9AXU_0041/2/348:364,
1/2/371:376,
1/4/29:32		No text annotation
J3_07616.1
J3_9AXU_0051/2/377:384,
1/2/411:412,
1/4/27:28		No text annotation
J3_68715.1
J3_9AXU_0061/2/377:387,
1/2/398:412,
1/4/27:28		No text annotation
J3_17917.1
J3_9AXU_0071/2/444:455,
1/2/498:507,
1/2/642:648		No text annotation
J3_9AXU_0081/2/513:514,
1/2/612:621,
1/2/631:636		No text annotation
J3_86133.1
J3_9AXU_0091/2/846:852,
1/2/937:939,
1/2/955:958		No text annotation
J3_46658.1
J3_9AXU_0101/2/861:863,
1/2/895:899,
1/2/924:927		No text annotation
J3_69816.1
J3_9AXU_0111/2/1018:1019,
1/2/1094:1098,
1/2/1124:1130		No text annotation
J3_84137.1
J3_9AXU_0131/2/1513:1519,
1/2/1912:1914,
1/2/1926:1929		No text annotation
J3_05025.1
J3_9AXU_0141/2/1522:1525,
1/2/1892:1898,
1/2/1907:1909		No text annotation
J3_76012.1
J3_9AXU_0151/2/1560:1565,
1/2/1626:1630,
1/2/1647:1648		No text annotation
J3_94309.1
J3_9AXU_0161/2/1571:1576,
1/2/1585:1601,
1/2/1608:1619		No text annotation
J3_9AXU_0171/2/1666:1667,
1/2/1676:1680,
1/2/1851:1852		No text annotation
J3_05348.1
J3_9AXU_0181/2/1689:1693,
1/2/1832:1833,
1/2/1837:1842		No text annotation
J3_08594.1
J3_9AXU_0191/2/2520:2523,
1/2/2608:2612,
1/2/2686:2692		No text annotation
J3_86017.1
J3_9AXU_0201/2/2625:2630,
1/2/2642:2659,
1/2/2672:2676		No text annotation
J3_9AXU_0211/2/2746:2748,
1/2/2849:2860,
1/2/2888:2893		No text annotation
J3_04772.1
J3_9AXU_0221/2/2759:2761,
1/2/2785:2787,
1/2/2796:2801		No text annotation
J3_05327.1
J3_9AXU_0231/2/2981:2984,
1/2/3009:3011,
1/2/3025:3031		No text annotation
J3_44047.1
J3_9AXU_0241/2/3261:3271,
1/2/3312:3320,
1/2/3365:3385		No text annotation
J3_9AXU_0251/2/3399:3401,
1/2/3415:3419,
1/2/3489:3492		No text annotation
J3_9AXU_0261/3/9:14,
1/3/65:66,
1/3/109:110		No text annotation
J3_26985.1
J3_9AXU_0271/4/52:53,
1/4/66:72,
1/4/104:108		No text annotation
J3_01004.1
J4_9AXU_0011/2/112:113,
1/2/275:280,
1/2/301:307,
1/2/324:327		No text annotation
J4_94698.1
J4_9AXU_0021/2/188:196,
1/2/212:215,
1/2/219:221,
1/2/233:240		No text annotation
J4_9AXU_0031/2/1485:1491,
1/2/1509:1510,
1/2/1932:1935,
1/2/2440:2441		No text annotation
J4_34212.1
J4_9AXU_0041/2/1526:1530,
1/2/1554:1559,
1/2/1649:1650,
1/2/1884:1891		No text annotation
J4_77353.1
J4_9AXU_0051/2/1529:1530,
1/2/1554:1559,
1/2/1649:1650,
1/2/1884:1890		No text annotation
J4_48150.1
J4_9AXU_0061/2/1709:1710,
1/2/1728:1729,
1/2/1792:1793,
1/2/1813:1814		No text annotation
J4_75575.1
J4_9AXU_0071/2/2218:2222,
1/2/2234:2238,
1/2/2274:2278,
1/2/2405:2410		No text annotation
J4_78485.1
J4_9AXU_0081/2/2280:2282,
1/2/2336:2337,
1/2/2355:2364,
1/2/2398:2403		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_9AXU_0091/2/2749:2753,
1/2/2807:2809,
1/2/2836:2837,
1/2/2846:2848		No text annotation
J4_9AXU_0101/2/3106:3108,
1/2/3138:3139,
1/2/3194:3196,
1/2/3230:3232		No text annotation
J4_37757.1
J5_9AXU_0011/2/20:22,
1/4/43:50,
1/4/110:115,
1/4/123:124,
1/4/145:147		No text annotation
J5_27223.1
J5_9AXU_0021/2/683:688,
1/2/831:834,
1/2/973:976,
1/2/1409:1410,
1/2/1465:1471		No text annotation
J5_08384.1
J5_9AXU_0031/2/700:703,
1/2/729:733,
1/2/740:748,
1/2/777:779,
1/2/814:819		No text annotation
J5_56629.1
J5_9AXU_0041/2/1961:1969,
1/2/1993:1994,
1/2/2197:2198,
1/2/2202:2210,
1/2/2419:2421		No text annotation
J5_99177.1
J5_9AXU_0051/2/2487:2494,
1/2/2910:2918,
1/2/2962:2971,
1/2/3046:3052,
1/2/3070:3075		No text annotation
J5_14788.2
J5_9AXU_0071/2/2504:2507,
1/2/2706:2709,
1/2/2722:2723,
1/2/2745:2746,
1/2/2893:2899		No text annotation
J5_96125.1
J6_9AXU_0011/2/22:27,
1/2/58:68,
1/2/75:79,
1/2/106:110,
1/2/329:339,
1/4/40:43		No text annotation
J6_18219.1
J6_9AXU_0031/2/2504:2507,
1/2/2706:2709,
1/2/2722:2723,
1/2/2745:2748,
1/2/2849:2860,
1/2/2888:2899		No text annotation
J6_84807.1
J6_9AXU_0021/2/2504:2507,
1/2/2706:2709,
1/2/2722:2724,
1/2/2744:2748,
1/2/2849:2860,
1/2/2888:2899		No text annotation
J7_9AXU_0011/2/981:986,
1/2/999:1000,
1/2/1145:1148,
1/2/1172:1177,
1/2/1188:1192,
1/2/1369:1370,
1/2/1399:1404		No text annotation
J7_21233.6

Problematic loops

#loop idProblemSequence
J3_9AXU_028No text annotation
J3_9AXU_012No text annotation
J5_9AXU_006No text annotation

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