3D structure

PDB id
9AXU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-translating S. pombe ribosome large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.94 Å

Loop

Sequence
UUUGGGAAUG
Length
10 nucleotides
Bulged bases
9AXU|1|2|G|291, 9AXU|1|2|A|292, 9AXU|1|2|A|293
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_63894.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
18

Unit IDs

9AXU|1|2|U|286
9AXU|1|2|U|287
9AXU|1|2|U|288
9AXU|1|2|G|289
9AXU|1|2|G|290
9AXU|1|2|G|291
9AXU|1|2|A|292
9AXU|1|2|A|293
9AXU|1|2|U|294
9AXU|1|2|G|295

Current chains

Chain 2
28S ribosomal RNA

Nearby chains

Chain 0
Large ribosomal subunit protein eL42
Chain X
Large ribosomal subunit protein eL13
Chain Z
Large ribosomal subunit protein eL15B
Chain m
Large ribosomal subunit protein uL15B

Coloring options:

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