HL_9AXU_014

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGAUGAAAA

Length

9 nucleotides

Bulged bases

9AXU|1|2|A|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9AXU|1|2|U|712
9AXU|1|2|G|713
9AXU|1|2|A|714
9AXU|1|2|U|715
9AXU|1|2|G|716
9AXU|1|2|A|717
9AXU|1|2|A|718
9AXU|1|2|A|719
9AXU|1|2|A|720

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL4A

Chain X

Large ribosomal subunit protein eL13

Chain Z

Large ribosomal subunit protein eL15B

Chain k

Large ribosomal subunit protein uL24