HL_9AXU_024

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|G|1179
9AXU|1|2|G|1180
9AXU|1|2|A|1181
9AXU|1|2|U|1182
9AXU|1|2|G|1183
9AXU|1|2|A|1184
9AXU|1|2|A|1185
9AXU|1|2|C|1186

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain S

Large ribosomal subunit protein uL30C

Chain q

Large ribosomal subunit protein eL32A

Chain r

Large ribosomal subunit protein eL33A