HL_9AXU_028

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9AXU|1|2|A|1496
9AXU|1|2|U|1497
9AXU|1|2|G|1498
9AXU|1|2|A|1499
9AXU|1|2|G|1500
9AXU|1|2|A|1501
9AXU|1|2|A|1502
9AXU|1|2|C|1503
9AXU|1|2|U|1504

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein uL22A

Chain d

Large ribosomal subunit protein eL19B

Chain p

Large ribosomal subunit protein eL31