HL_9AXU_049

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUUUCUUCGCGAAC

Length

14 nucleotides

Bulged bases

9AXU|1|2|U|2664, 9AXU|1|2|C|2666, 9AXU|1|2|C|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|G|2659
9AXU|1|2|U|2660
9AXU|1|2|U|2661
9AXU|1|2|U|2662
9AXU|1|2|C|2663
9AXU|1|2|U|2664
9AXU|1|2|U|2665
9AXU|1|2|C|2666
9AXU|1|2|G|2667
9AXU|1|2|C|2668
9AXU|1|2|G|2669
9AXU|1|2|A|2670
9AXU|1|2|A|2671
9AXU|1|2|C|2672

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein eL8

Chain j

Large ribosomal subunit protein uL23A

Chain l

Large ribosomal subunit protein eL27A