HL_9AXU_051

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UUAAAAGAUAACG

Length

13 nucleotides

Bulged bases

9AXU|1|2|A|2732, 9AXU|1|2|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9AXU|1|2|U|2728
9AXU|1|2|U|2729
9AXU|1|2|A|2730
9AXU|1|2|A|2731
9AXU|1|2|A|2732
9AXU|1|2|A|2733
9AXU|1|2|G|2734
9AXU|1|2|A|2735
9AXU|1|2|U|2736
9AXU|1|2|A|2737
9AXU|1|2|A|2738
9AXU|1|2|C|2739
9AXU|1|2|G|2740

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL16A

Chain f

Large ribosomal subunit protein eL21B

Chain n

Large ribosomal subunit protein eL29