HL_9AXU_063

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9AXU|1|2|G|3212, 9AXU|1|2|C|3216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9AXU|1|2|C|3206
9AXU|1|2|U|3207
9AXU|1|2|G|3208
9AXU|1|2|A|3209
9AXU|1|2|A|3210
9AXU|1|2|C|3211
9AXU|1|2|G|3212
9AXU|1|2|C|3213
9AXU|1|2|C|3214
9AXU|1|2|U|3215
9AXU|1|2|C|3216
9AXU|1|2|U|3217
9AXU|1|2|A|3218
9AXU|1|2|A|3219
9AXU|1|2|G|3220

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL6B

Chain a

Large ribosomal subunit protein uL13A