HL_9AZC_003

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_003 not in the Motif Atlas

Homologous match to HL_7K98_003

Geometric discrepancy: 0.2494

The information below is about HL_7K98_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9AZC|1|AT|G|54
9AZC|1|AT|U|55
9AZC|1|AT|U|56
9AZC|1|AT|C|57
9AZC|1|AT|G|58
9AZC|1|AT|A|59
9AZC|1|AT|A|60
9AZC|1|AT|A|61
9AZC|1|AT|C|62

Current chains

Chain AT

AT site tRNA

Nearby chains

Chain CF

eEF1A

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lt

60S ribosomal protein L12