HL_9AZC_017

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

9AZC|1|L5|G|1178, 9AZC|1|L5|U|1179, 9AZC|1|L5|C|1181, 9AZC|1|L5|C|1182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|G|1173
9AZC|1|L5|G|1174
9AZC|1|L5|A|1175
9AZC|1|L5|C|1176
9AZC|1|L5|U|1177
9AZC|1|L5|G|1178
9AZC|1|L5|U|1179
9AZC|1|L5|C|1180
9AZC|1|L5|C|1181
9AZC|1|L5|C|1182
9AZC|1|L5|C|1183
9AZC|1|L5|A|1184
9AZC|1|L5|G|1185
9AZC|1|L5|U|1186
9AZC|1|L5|G|1187
9AZC|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like