HL_9AZC_042

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_042 not in the Motif Atlas

Geometric match to HL_9DFE_015

Geometric discrepancy: 0.1699

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9AZC|1|L5|C|2561
9AZC|1|L5|G|2562
9AZC|1|L5|C|2563
9AZC|1|L5|G|2564
9AZC|1|L5|A|2565
9AZC|1|L5|G|2566

Current chains

Chain L5

28S rRNA

Nearby chains