3D structure

PDB id
9AZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 80S ribosome (Consensus map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.19 Å

Loop

Sequence
GUUCUCUUU
Length
9 nucleotides
Bulged bases
9AZC|1|L5|U|2631
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9AZC_044 not in the Motif Atlas
Homologous match to HL_8P9A_148
Geometric discrepancy: 0.1747
The information below is about HL_8P9A_148
Detailed Annotation
Pseudoknot geometry
Broad Annotation
Pseudoknot geometry
Motif group
HL_22758.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

9AZC|1|L5|G|2624
9AZC|1|L5|U|2625
9AZC|1|L5|U|2626
9AZC|1|L5|C|2627
9AZC|1|L5|U|2628
9AZC|1|L5|C|2629
9AZC|1|L5|U|2630
9AZC|1|L5|U|2631
9AZC|1|L5|U|2632

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CI
NAC-beta
Chain LR
60S ribosomal protein L19
Chain LU
Heparin-binding protein HBp15

Coloring options:


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