HL_9AZC_059

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9AZC|1|L5|A|3876, 9AZC|1|L5|A|3877, 9AZC|1|L5|C|3878

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_059 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0636

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9AZC|1|L5|G|3873
9AZC|1|L5|G|3874
9AZC|1|L5|G|3875
9AZC|1|L5|A|3876
9AZC|1|L5|A|3877
9AZC|1|L5|C|3878
9AZC|1|L5|G|3879
9AZC|1|L5|G|3880
9AZC|1|L5|G|3881
9AZC|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32