HL_9AZC_078

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9AZC|1|L5|G|4910, 9AZC|1|L5|A|4911, 9AZC|1|L5|G|4913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_078 not in the Motif Atlas

Geometric match to HL_8CRE_068

Geometric discrepancy: 0.1165

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9AZC|1|L5|G|4907
9AZC|1|L5|G|4908
9AZC|1|L5|A|4909
9AZC|1|L5|G|4910
9AZC|1|L5|A|4911
9AZC|1|L5|G|4912
9AZC|1|L5|G|4913
9AZC|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a