HL_9AZC_093

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9AZC|1|S2|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_093 not in the Motif Atlas

Homologous match to HL_8CRE_193

Geometric discrepancy: 0.0966

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9AZC|1|S2|G|156
9AZC|1|S2|U|157
9AZC|1|S2|A|158
9AZC|1|S2|A|159
9AZC|1|S2|U|160
9AZC|1|S2|U|161
9AZC|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CF

eEF1A

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24