HL_9AZC_101

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9AZC|1|S2|A|500, 9AZC|1|S2|C|502, 9AZC|1|S2|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_101 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.1657

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9AZC|1|S2|C|498
9AZC|1|S2|G|499
9AZC|1|S2|A|500
9AZC|1|S2|C|501
9AZC|1|S2|C|502
9AZC|1|S2|C|503
9AZC|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24