HL_9AZC_105

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCUCGGCCGGGGCCCGAA

Length

18 nucleotides

Bulged bases

9AZC|1|S2|G|752, 9AZC|1|S2|C|785, 9AZC|1|S2|G|786, 9AZC|1|S2|G|787, 9AZC|1|S2|G|788, 9AZC|1|S2|G|789, 9AZC|1|S2|C|790, 9AZC|1|S2|C|791, 9AZC|1|S2|C|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|S2|U|747
9AZC|1|S2|C|748
9AZC|1|S2|U|749
9AZC|1|S2|C|750
9AZC|1|S2|G|751
9AZC|1|S2|G|752
9AZC|1|S2|C|753
9AZC|1|S2|C|785
9AZC|1|S2|G|786
9AZC|1|S2|G|787
9AZC|1|S2|G|788
9AZC|1|S2|G|789
9AZC|1|S2|C|790
9AZC|1|S2|C|791
9AZC|1|S2|C|792
9AZC|1|S2|G|793
9AZC|1|S2|A|794
9AZC|1|S2|A|795

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7