HL_9AZC_120

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZC_120 not in the Motif Atlas

Homologous match to HL_8CRE_221

Geometric discrepancy: 0.1576

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9AZC|1|S2|C|1460
9AZC|1|S2|G|1461
9AZC|1|S2|U|1462
9AZC|1|S2|U|1463
9AZC|1|S2|C|1464
9AZC|1|S2|A|1465
9AZC|1|S2|G|1466

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sg

Receptor of activated protein C kinase 1