HL_9AZC_124

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGGGGUCGGCCCACGGCCCUGG

Length

22 nucleotides

Bulged bases

9AZC|1|S2|G|1760, 9AZC|1|S2|C|1762, 9AZC|1|S2|G|1763, 9AZC|1|S2|G|1764, 9AZC|1|S2|C|1765, 9AZC|1|S2|C|1766, 9AZC|1|S2|C|1767, 9AZC|1|S2|A|1768, 9AZC|1|S2|C|1769, 9AZC|1|S2|G|1770, 9AZC|1|S2|C|1773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|S2|C|1756
9AZC|1|S2|G|1757
9AZC|1|S2|G|1758
9AZC|1|S2|G|1759
9AZC|1|S2|G|1760
9AZC|1|S2|U|1761
9AZC|1|S2|C|1762
9AZC|1|S2|G|1763
9AZC|1|S2|G|1764
9AZC|1|S2|C|1765
9AZC|1|S2|C|1766
9AZC|1|S2|C|1767
9AZC|1|S2|A|1768
9AZC|1|S2|C|1769
9AZC|1|S2|G|1770
9AZC|1|S2|G|1771
9AZC|1|S2|C|1772
9AZC|1|S2|C|1773
9AZC|1|S2|C|1774
9AZC|1|S2|U|1775
9AZC|1|S2|G|1776
9AZC|1|S2|G|1777

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6