HL_9AZM_002
3D structure
- PDB id
- 9AZM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human ribosome (Focused on 40S with SERBP1 CTD)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9AZM|1|S2|U|1300, 9AZM|1|S2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZM_002 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.1511
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9AZM|1|S2|A|1295
9AZM|1|S2|U|1296
9AZM|1|S2|U|1297
9AZM|1|S2|G|1298
9AZM|1|S2|A|1299
9AZM|1|S2|U|1300
9AZM|1|S2|A|1301
9AZM|1|S2|G|1302
9AZM|1|S2|C|1303
9AZM|1|S2|U|1304
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Serbp1
- Chain SP
- Small ribosomal subunit protein uS19
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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