9AZM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9AZM_001 | 1/S2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_9AZM_002 | 1/S2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_98423.3 | |
| HL_9AZM_003 | 1/S2/1353:1358 | GNRA | homologous HL_8CRE_218 HL_34789.4 | |
| HL_9AZM_004 | 1/S2/1366:1373 | T-loop related | homologous HL_8CRE_219 HL_63894.2 | |
| HL_9AZM_005 | 1/S2/1416:1424 | No text annotation | homologous HL_8CRE_220 HL_89167.2 | |
| HL_9AZM_006 | 1/S2/1460:1466 | No text annotation | homologous HL_8CRE_221 HL_76371.2 | |
| HL_9AZM_007 | 1/S2/1565:1570 | GNRA | homologous HL_8CRE_222 HL_34789.4 | |
| HL_9AZM_008 | 1/S2/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_9AZM_009 | 1/S2/1658:1666 | T-loop with 1 bulged base | homologous HL_8CRE_224 HL_61418.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9AZM_001 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_8P9A_431 IL_63596.12 | |
| IL_9AZM_002 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.3 | |
| IL_9AZM_003 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_8P9A_433 IL_34520.3 | |
| IL_9AZM_004 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8CRE_448 IL_01003.3 | |
| IL_9AZM_005 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation | ||
| IL_9AZM_006 | 1/S2/1281:1290, 1/S2/1309:1316 | No text annotation | ||
| IL_9AZM_007 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation | ||
| IL_9AZM_008 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_8CRE_450 IL_55553.2 | |
| IL_9AZM_009 | 1/S2/1325:1327, 1/S2/1502:1503 | No text annotation | homologous IL_8CRE_451 IL_97561.3 | |
| IL_9AZM_010 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | geometric IL_8CRE_452 IL_82453.1 | |
| IL_9AZM_011 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9AZM_012 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_9AZM_013 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8CRE_455 IL_14190.2 | |
| IL_9AZM_014 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_9AZM_015 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8CRE_457 IL_34520.3 | |
| IL_9AZM_016 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_9AZM_017 | 1/S2/1402:1405, 1/S2/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.2 | |
| IL_9AZM_018 | 1/S2/1408:1409, 1/S2/1432:1438 | No text annotation | ||
| IL_9AZM_019 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9AZM_020 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.3 | |
| IL_9AZM_021 | 1/S2/1541:1558, 1/S2/1577:1592 | No text annotation | ||
| IL_9AZM_022 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_71625.3 | |
| IL_9AZM_023 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9AZM_001 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_9AZM_002 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8CRE_079 J3_44359.1 | |
| J3_9AZM_003 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_9AZM_004 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_9AZM_005 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_9AZM_006 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8CRE_083 J3_76043.4 | |
| J3_9AZM_007 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9AZM_008 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8CRE_086 J3_03192.1 |
Problematic loops
No problematic loops
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