HL_9AZM_003

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZM_003 not in the Motif Atlas

Homologous match to HL_8CRE_218

Geometric discrepancy: 0.2802

The information below is about HL_8CRE_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9AZM|1|S2|A|1353
9AZM|1|S2|G|1354
9AZM|1|S2|C|1355
9AZM|1|S2|G|1356
9AZM|1|S2|A|1357
9AZM|1|S2|U|1358

Current chains

Chain S2

18S rRNA

Nearby chains