HL_9AZM_004

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9AZM|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZM_004 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.1089

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9AZM|1|S2|G|1366
9AZM|1|S2|U|1367
9AZM|1|S2|U|1368
9AZM|1|S2|A|1369
9AZM|1|S2|A|1370
9AZM|1|S2|U|1371
9AZM|1|S2|U|1372
9AZM|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains