HL_9AZM_005

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9AZM|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZM_005 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.4599

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9AZM|1|S2|C|1416
9AZM|1|S2|C|1417
9AZM|1|S2|C|1418
9AZM|1|S2|C|1419
9AZM|1|S2|G|1420
9AZM|1|S2|A|1421
9AZM|1|S2|G|1422
9AZM|1|S2|C|1423
9AZM|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19