HL_9AZN_020

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

9AZN|1|L5|C|1365, 9AZN|1|L5|G|1366, 9AZN|1|L5|C|1367, 9AZN|1|L5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|L5|U|1364
9AZN|1|L5|C|1365
9AZN|1|L5|G|1366
9AZN|1|L5|C|1367
9AZN|1|L5|A|1368
9AZN|1|L5|C|1369
9AZN|1|L5|G|1370
9AZN|1|L5|A|1371
9AZN|1|L5|A|1372
9AZN|1|L5|A|1373

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain LY

60S ribosomal protein L26