9AZN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9AZN_002 | 1/AP/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
| HL_9AZN_003 | 1/AP/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_33597.1 | |
| HL_9AZN_004 | 1/L5/37:44 | No text annotation | homologous HL_8CRE_001 NA | |
| HL_9AZN_005 | 1/L5/68:73 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_9AZN_006 | 1/L5/89:95 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_9AZN_008 | 1/L5/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_1P6V_004 NA | |
| HL_9AZN_009 | 1/L5/222:226 | No text annotation | geometric HL_8K0Y_001 HL_75660.6 | |
| HL_9AZN_010 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_9AZN_011 | 1/L5/289:298 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_9AZN_012 | 1/L5/314:323 | No text annotation | homologous HL_8CRE_009 NA | |
| HL_9AZN_013 | 1/L5/368:373 | GNRA | homologous HL_8P9A_122 HL_34789.1 | |
| HL_9AZN_014 | 1/L5/393:398 | GNRA | homologous HL_8CRE_011 NA | |
| HL_9AZN_017 | 1/L5/1173:1188 | No text annotation | ||
| HL_9AZN_019 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_9AZN_020 | 1/L5/1364:1373 | No text annotation | ||
| HL_9AZN_021 | 1/L5/1389:1394 | GNRA | homologous HL_8CRE_015 NA | |
| HL_9AZN_023 | 1/L5/1436:1448 | No text annotation | ||
| HL_9AZN_024 | 1/L5/1480:1484 | No text annotation | ||
| HL_9AZN_025 | 1/L5/1561:1566 | GNRA | homologous HL_8P9A_131 HL_34789.1 | |
| HL_9AZN_026 | 1/L5/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_9AZN_027 | 1/L5/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_9AZN_028 | 1/L5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9AZN_030 | 1/L5/1816:1823 | T-loop related | homologous HL_8CRE_023 NA | |
| HL_9AZN_031 | 1/L5/1864:1870 | GNRA | homologous HL_8CRE_024 NA | |
| HL_9AZN_032 | 1/L5/1886:1893 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
| HL_9AZN_033 | 1/L5/1978:1988 | No text annotation | homologous HL_8CRE_026 NA | |
| HL_9AZN_035 | 1/L5/2087:2270 | No text annotation | ||
| HL_9AZN_036 | 1/L5/2317:2322 | GNRA | homologous HL_8CRE_029 NA | |
| HL_9AZN_037 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_9AZN_038 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_9AZN_039 | 1/L5/2458:2463 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_9AZN_041 | 1/L5/2523:2532 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_9AZN_043 | 1/L5/2578:2583 | GNRA | homologous HL_8CRE_035 NA | |
| HL_9AZN_044 | 1/L5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
| HL_9AZN_045 | 1/L5/2664:2670 | No text annotation | homologous HL_8P9A_149 HL_97067.1 | |
| HL_9AZN_046 | 1/L5/2704:2712 | No text annotation | ||
| HL_9AZN_047 | 1/L5/2738:2742 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_9AZN_048 | 1/L5/2792:2799 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_9AZN_049 | 1/L5/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_9AZN_050 | 1/L5/2872:2877 | UNCG | homologous HL_8CRE_042 NA | |
| HL_9AZN_053 | 1/L5/3614:3618 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_9AZN_054 | 1/L5/3639:3649 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_9AZN_055 | 1/L5/3668:3674 | GNRA | homologous HL_8CRE_045 NA | |
| HL_9AZN_056 | 1/L5/3724:3729 | GNRA | homologous HL_8CRE_046 NA | |
| HL_9AZN_057 | 1/L5/3757:3767 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_9AZN_058 | 1/L5/3773:3775 | No text annotation | ||
| HL_9AZN_059 | 1/L5/3796:3804 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_9AZN_060 | 1/L5/3873:3882 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_9AZN_061 | 1/L5/3953:4059 | No text annotation | ||
| HL_9AZN_064 | 1/L5/4193:4201 | No text annotation | homologous HL_8P9A_165 HL_11974.1 | |
| HL_9AZN_065 | 1/L5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_9AZN_066 | 1/L5/4250:4258 | No text annotation | homologous HL_8CRE_055 NA | |
| HL_9AZN_067 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8CRE_056 NA | |
| HL_9AZN_068 | 1/L5/4301:4309 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_9AZN_069 | 1/L5/4321:4326 | GNRA | homologous HL_8CRE_058 NA | |
| HL_9AZN_070 | 1/L5/4352:4362 | No text annotation | geometric HL_7JRT_001 NA | |
| HL_9AZN_071 | 1/L5/4417:4425 | No text annotation | homologous HL_8CRE_060 NA | |
| HL_9AZN_072 | 1/L5/4474:4481 | GNRA variation | homologous HL_8CRE_061 NA | |
| HL_9AZN_073 | 1/L5/4497:4503 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_9AZN_074 | 1/L5/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_9AZN_075 | 1/L5/4603:4608 | GNRA | homologous HL_8CRE_064 NA | |
| HL_9AZN_076 | 1/L5/4646:4651 | No text annotation | homologous HL_8CRE_065 NA | |
| HL_9AZN_077 | 1/L5/4688:4702 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_9AZN_079 | 1/L5/4907:4914 | No text annotation | geometric HL_8CRE_068 NA | |
| HL_9AZN_080 | 1/L5/4975:4983 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_9AZN_082 | 1/L7/32:45 | No text annotation | geometric HL_4V9F_074 HL_97756.3 | |
| HL_9AZN_083 | 1/L7/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.1 | |
| HL_9AZN_084 | 1/L7/86:91 | GNRA | homologous HL_8OI5_070 HL_34789.1 | |
| HL_9AZN_085 | 1/L8/47:56 | No text annotation | homologous HL_8CRE_074 NA | |
| HL_9AZN_086 | 1/L8/68:90 | No text annotation | ||
| HL_9AZN_087 | 1/L8/107:112 | No text annotation | homologous HL_8P9A_188 HL_13184.1 | |
| HL_9AZN_088 | 1/L8/122:128 | No text annotation | ||
| HL_9AZN_090 | 1/PE/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_68642.1 | |
| HL_9AZN_093 | 1/S3/7:17 | No text annotation | homologous HL_8CRE_191 HL_31940.1 | |
| HL_9AZN_095 | 1/S3/156:162 | GNRA related | homologous HL_8CRE_193 HL_34789.1 | |
| HL_9AZN_097 | 1/S3/288:295 | T-loop with 1 bulged base | homologous HL_8CRE_196 HL_67772.1 | |
| HL_9AZN_099 | 1/S3/377:387 | No text annotation | ||
| HL_9AZN_100 | 1/S3/416:421 | GNRA variation | homologous HL_8CRE_199 HL_34789.1 | |
| HL_9AZN_101 | 1/S3/441:452 | No text annotation | homologous HL_8CRE_200 HL_86432.1 | |
| HL_9AZN_102 | 1/S3/462:467 | UNCG | homologous HL_8P9A_200 HL_61337.1 | |
| HL_9AZN_103 | 1/S3/498:504 | No text annotation | homologous HL_8CRE_202 HL_89167.1 | |
| HL_9AZN_105 | 1/S3/618:623 | No text annotation | homologous HL_8CRE_205 HL_93535.2 | |
| HL_9AZN_107 | 1/S3/820:828 | No text annotation | homologous HL_8CRE_207 HL_11974.1 | |
| HL_9AZN_110 | 1/S3/957:966 | No text annotation | homologous HL_8CRE_210 HL_38491.1 | |
| HL_9AZN_111 | 1/S3/994:999 | GNRA | homologous HL_8P9A_210 HL_34789.1 | |
| HL_9AZN_112 | 1/S3/1054:1064 | No text annotation | homologous HL_8P9A_211 HL_38491.1 | |
| HL_9AZN_114 | 1/S3/1141:1146 | GNRA | homologous HL_8CRE_214 HL_34789.1 | |
| HL_9AZN_115 | 1/S3/1178:1183 | GNRA | homologous HL_8P9A_214 HL_34789.1 | |
| HL_9AZN_116 | 1/S3/1245:1254 | No text annotation | homologous HL_8CRE_216 HL_97521.1 | |
| HL_9AZN_117 | 1/S3/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_45359.1 | |
| HL_9AZN_118 | 1/S3/1353:1358 | GNRA | homologous HL_8CRE_218 HL_34789.1 | |
| HL_9AZN_119 | 1/S3/1366:1373 | T-loop related | homologous HL_8CRE_219 HL_63894.1 | |
| HL_9AZN_121 | 1/S3/1460:1466 | No text annotation | homologous HL_8CRE_221 HL_76371.1 | |
| HL_9AZN_122 | 1/S3/1565:1570 | GNRA | homologous HL_8CRE_222 HL_34789.1 | |
| HL_9AZN_123 | 1/S3/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_9AZN_124 | 1/S3/1658:1666 | T-loop with 1 bulged base | homologous HL_8CRE_224 HL_61418.1 | |
| HL_9AZN_126 | 1/S3/1847:1852 | GNRA variation | homologous HL_8CRE_225 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9AZN_001 | No text annotation | ||
| HL_9AZN_007 | No text annotation | ||
| HL_9AZN_015 | No text annotation | ||
| HL_9AZN_016 | No text annotation | ||
| HL_9AZN_018 | No text annotation | ||
| HL_9AZN_022 | No text annotation | ||
| HL_9AZN_029 | No text annotation | ||
| HL_9AZN_034 | GNRA wlth tandem sheared | ||
| HL_9AZN_040 | No text annotation | ||
| HL_9AZN_042 | GNRA | ||
| HL_9AZN_051 | No text annotation | ||
| HL_9AZN_052 | No text annotation | ||
| HL_9AZN_062 | No text annotation | ||
| HL_9AZN_063 | No text annotation | ||
| HL_9AZN_078 | No text annotation | ||
| HL_9AZN_081 | No text annotation | ||
| HL_9AZN_089 | tRNA D-loop | ||
| HL_9AZN_091 | T-loop with 2 stacked bulged bases | ||
| HL_9AZN_092 | No text annotation | ||
| HL_9AZN_094 | No text annotation | ||
| HL_9AZN_096 | No text annotation | ||
| HL_9AZN_098 | No text annotation | ||
| HL_9AZN_104 | No text annotation | ||
| HL_9AZN_106 | No text annotation | ||
| HL_9AZN_108 | No text annotation | ||
| HL_9AZN_109 | No text annotation | ||
| HL_9AZN_113 | No text annotation | ||
| HL_9AZN_120 | No text annotation | ||
| HL_9AZN_125 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9AZN_002 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8P9A_231 IL_05642.1 | |
| IL_9AZN_003 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.1 | |
| IL_9AZN_004 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 NA | |
| IL_9AZN_005 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_9AZN_006 | 1/L5/30:37, 1/L5/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_9AZN_007 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_9AZN_008 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9AZN_009 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9AZN_011 | 1/L5/180:189, 1/L5/252:256 | No text annotation | ||
| IL_9AZN_012 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9AZN_013 | 1/L5/199:201, 1/L5/214:215 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_9AZN_014 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_9AZN_015 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8CRE_014 NA | |
| IL_9AZN_016 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_9AZN_017 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_9AZN_018 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9AZN_019 | 1/L5/448:450, 1/L5/1297:1298 | No text annotation | ||
| IL_9AZN_020 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9AZN_021 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_9AZN_022 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_9AZN_023 | 1/L5/482:485, 1/L5/671:672 | Multiple bulged bases | geometric IL_1R3E_002 IL_44609.1 | |
| IL_9AZN_024 | 1/L5/487:488, 1/L5/665:669 | No text annotation | ||
| IL_9AZN_025 | 1/L5/491:495, 1/L5/659:662 | No text annotation | ||
| IL_9AZN_027 | 1/L5/500:505, 1/L5/653:655 | No text annotation | ||
| IL_9AZN_028 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_9AZN_030 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9AZN_031 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_44609.1 | |
| IL_9AZN_032 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_9AZN_033 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_9AZN_036 | 1/L5/745:754, 1/L5/909:919 | No text annotation | ||
| IL_9AZN_037 | 1/L5/989:994, 1/L5/1050:1064 | No text annotation | ||
| IL_9AZN_038 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_14190.1 | |
| IL_9AZN_039 | 1/L5/1077:1079, 1/L5/1220:1234 | No text annotation | ||
| IL_9AZN_040 | 1/L5/1082:1084, 1/L5/1213:1217 | Isolated cWH basepair | geometric IL_4KTG_005 NA | |
| IL_9AZN_041 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9AZN_046 | 1/L5/1244:1245, 1/L5/1265:1267 | No text annotation | geometric IL_8CRE_048 NA | |
| IL_9AZN_047 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9AZN_048 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_9AZN_049 | 1/L5/1360:1361, 1/L5/1376:1379 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_9AZN_050 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | geometric IL_3BBM_001 IL_47352.1 | |
| IL_9AZN_051 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_58355.1 | |
| IL_9AZN_052 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_14190.1 | |
| IL_9AZN_053 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_9AZN_054 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_9AZN_055 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.1 | |
| IL_9AZN_056 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_9AZN_057 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8CRE_031 NA | |
| IL_9AZN_058 | 1/L5/1550:1551, 1/L5/1576:1578 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_9AZN_059 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_9AZN_060 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_9AZN_061 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8P9A_260 IL_97561.1 | |
| IL_9AZN_062 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_9AZN_063 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.1 | |
| IL_9AZN_064 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_9AZN_065 | 1/L5/1694:1721, 1/L5/1841:1842 | No text annotation | ||
| IL_9AZN_066 | 1/L5/1723:1725, 1/L5/1838:1839 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_9AZN_067 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_9AZN_068 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_9AZN_069 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_9AZN_070 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_8CRE_044 NA | |
| IL_9AZN_071 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.1 | |
| IL_9AZN_072 | 1/L5/1753:1756, 1/L5/1775:1777 | No text annotation | geometric IL_8CRE_417 IL_32983.1 | |
| IL_9AZN_073 | 1/L5/1756:1759, 1/L5/1773:1775 | Isolated cWH basepair | geometric IL_8AF0_002 NA | |
| IL_9AZN_074 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.1 | |
| IL_9AZN_075 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.1 | |
| IL_9AZN_077 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8P9A_276 IL_08938.1 | |
| IL_9AZN_078 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8CRE_052 NA | |
| IL_9AZN_079 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | geometric IL_8TSV_002 NA | |
| IL_9AZN_080 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_9AZN_081 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_9AZN_082 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_9AZN_083 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.1 | |
| IL_9AZN_084 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn | homologous IL_8CRE_057 NA | |
| IL_9AZN_085 | 1/L5/1972:1977, 1/L5/1989:1994 | No text annotation | ||
| IL_9AZN_087 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_4C7O_003 NA | |
| IL_9AZN_088 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8CRE_061 NA | |
| IL_9AZN_089 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_9AZN_090 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8P9A_287 IL_90775.1 | |
| IL_9AZN_091 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_9AZN_092 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_9AZN_093 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | homologous IL_8CRE_066 NA | |
| IL_9AZN_094 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_9AZN_095 | 1/L5/2477:2479, 1/L5/2499:2500 | Minor groove platform | geometric IL_5T83_003 NA | |
| IL_9AZN_097 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | ||
| IL_9AZN_098 | 1/L5/2549:2550, 1/L5/2768:2770 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_9AZN_099 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.1 | |
| IL_9AZN_100 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_9AZN_101 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_9AZN_102 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9AZN_103 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_9AZN_104 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_9AZN_105 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_9AZN_106 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8P9A_303 IL_10432.1 | |
| IL_9AZN_107 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_9AZN_108 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9AZN_109 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
| IL_9AZN_110 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_9AZN_111 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_9AZN_112 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_9AZN_115 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.1 | |
| IL_9AZN_116 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_9AZN_117 | 1/L5/3700:3703, 1/L5/3749:3750 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_9AZN_118 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_9AZN_119 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | homologous IL_8CRE_091 NA | |
| IL_9AZN_120 | 1/L5/3710:3714, 1/L5/3739:3741 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_9AZN_121 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_9AZN_122 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_8P9A_317 IL_24886.1 | |
| IL_9AZN_123 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_9AZN_124 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_75527.1 | |
| IL_9AZN_125 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_9AZN_126 | 1/L5/3913:3915, 1/L5/4388:4389 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_9AZN_127 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_8P9A_322 IL_34520.1 | |
| IL_9AZN_128 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_9AZN_130 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_9AZN_131 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.1 | |
| IL_9AZN_132 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_9AZN_133 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.1 | |
| IL_9AZN_134 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.1 | |
| IL_9AZN_135 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_8P9A_328 IL_15011.1 | |
| IL_9AZN_136 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.7 | |
| IL_9AZN_137 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.1 | |
| IL_9AZN_138 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_8CRE_112 NA | |
| IL_9AZN_139 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | homologous IL_8CRE_113 NA | |
| IL_9AZN_140 | 1/L5/4412:4416, 1/L5/4426:4430 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.1 | |
| IL_9AZN_141 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | homologous IL_8P9A_334 IL_46637.1 | |
| IL_9AZN_142 | 1/L5/4456:4458, 1/L5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_9AZN_143 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_8P9A_336 IL_44609.1 | |
| IL_9AZN_144 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_9AZN_145 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_9AZN_146 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_9AZN_147 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_9AZN_148 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_8P9A_341 IL_14190.1 | |
| IL_9AZN_149 | 1/L5/4580:4582, 1/L5/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 NA | |
| IL_9AZN_150 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared | geometric IL_6YML_002 IL_58355.1 | |
| IL_9AZN_151 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_9AZN_152 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_62167.1 | |
| IL_9AZN_153 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_9AZN_154 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | homologous IL_8CRE_127 NA | |
| IL_9AZN_155 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_9AZN_156 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_9AZN_157 | 1/L5/4681:4685, 1/L5/4705:4709 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_9AZN_158 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation | ||
| IL_9AZN_159 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.1 | |
| IL_9AZN_160 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_9AZN_161 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_9AZN_162 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_9AZN_163 | 1/L5/4885:4889, 1/L5/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
| IL_9AZN_164 | 1/L5/4890:4897, 1/L5/4924:4929 | No text annotation | ||
| IL_9AZN_167 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_9AZN_168 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_4RBZ_002 NA | |
| IL_9AZN_169 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_9AZN_170 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_00086.1 | |
| IL_9AZN_171 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_9AZN_172 | 1/L5/5012:5014, 1/L5/5035:5036 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_9AZN_173 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared | homologous IL_8CRE_141 NA | |
| IL_9AZN_174 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_8OI5_134 IL_14190.1 | |
| IL_9AZN_175 | 1/L7/21:27, 1/L7/52:57 | No text annotation | homologous IL_8OI5_135 IL_41504.1 | |
| IL_9AZN_176 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_9AZN_177 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9AZN_178 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8OI5_139 IL_62167.1 | |
| IL_9AZN_179 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 | |
| IL_9AZN_180 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.1 | |
| IL_9AZN_181 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_9AZN_183 | 1/S3/23:25, 1/S3/649:651 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_01003.1 | |
| IL_9AZN_184 | 1/S3/34:36, 1/S3/519:521 | Isolated non-canonical cWW pair | homologous IL_8CRE_391 IL_01003.1 | |
| IL_9AZN_185 | 1/S3/37:40, 1/S3/514:518 | Double sheared; A in syn | geometric IL_8T29_001 IL_58355.1 | |
| IL_9AZN_186 | 1/S3/41:47, 1/S3/479:481 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_9AZN_187 | 1/S3/49:51, 1/S3/476:477 | Minor groove platform | homologous IL_8P9A_377 IL_34520.1 | |
| IL_9AZN_188 | 1/S3/57:62, 1/S3/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_9AZN_189 | 1/S3/63:68, 1/S3/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_9AZN_190 | 1/S3/108:115, 1/S3/348:353 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9AZN_191 | 1/S3/116:121, 1/S3/343:347 | No text annotation | homologous IL_8CRE_399 IL_31545.1 | |
| IL_9AZN_193 | 1/S3/130:144, 1/S3/175:182 | No text annotation | ||
| IL_9AZN_195 | 1/S3/152:154, 1/S3/164:166 | No text annotation | homologous IL_8P9A_384 IL_23751.1 | |
| IL_9AZN_197 | 1/S3/216:219, 1/S3/302:309 | No text annotation | ||
| IL_9AZN_198 | 1/S3/223:288, 1/S3/295:298 | No text annotation | ||
| IL_9AZN_201 | 1/S3/359:364, 1/S3/396:403 | Kink-turn with non-sequential stacking | homologous IL_8CRE_408 IL_46174.4 | |
| IL_9AZN_202 | 1/S3/366:371, 1/S3/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_9AZN_203 | 1/S3/411:413, 1/S3/424:429 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_9AZN_204 | 1/S3/437:439, 1/S3/454:456 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.1 | |
| IL_9AZN_205 | 1/S3/459:461, 1/S3/468:470 | No text annotation | homologous IL_8CRE_412 IL_42997.4 | |
| IL_9AZN_206 | 1/S3/487:489, 1/S3/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.1 | |
| IL_9AZN_207 | 1/S3/491:495, 1/S3/508:509 | C-loop | homologous IL_8CRE_414 IL_26900.1 | |
| IL_9AZN_208 | 1/S3/495:496, 1/S3/506:508 | No text annotation | homologous IL_8CRE_415 IL_28408.1 | |
| IL_9AZN_210 | 1/S3/599:606, 1/S3/636:637 | SSU/LSU pseudoknot | homologous IL_8CRE_421 IL_11411.1 | |
| IL_9AZN_211 | 1/S3/606:608, 1/S3/635:636 | No text annotation | homologous IL_8CRE_422 IL_97561.1 | |
| IL_9AZN_212 | 1/S3/611:617, 1/S3/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_9AZN_213 | 1/S3/663:665, 1/S3/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9AZN_214 | 1/S3/665:671, 1/S3/1161:1162 | No text annotation | homologous IL_8CRE_424 IL_20847.1 | |
| IL_9AZN_215 | 1/S3/673:675, 1/S3/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8CRE_425 IL_01003.1 | |
| IL_9AZN_216 | 1/S3/676:680, 1/S3/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_9AZN_217 | 1/S3/802:803, 1/S3/860:863 | No text annotation | homologous IL_8CRE_428 IL_73108.1 | |
| IL_9AZN_218 | 1/S3/805:807, 1/S3/856:858 | Isolated non-canonical cWW pair | homologous IL_8CRE_429 IL_71625.1 | |
| IL_9AZN_219 | 1/S3/807:816, 1/S3/848:856 | No text annotation | ||
| IL_9AZN_220 | 1/S3/874:876, 1/S3/910:912 | Isolated non-canonical cWW pair | geometric IL_8P9A_308 IL_01003.1 | |
| IL_9AZN_221 | 1/S3/877:879, 1/S3/907:909 | No text annotation | geometric IL_8P9A_408 IL_23751.1 | |
| IL_9AZN_222 | 1/S3/922:923, 1/S3/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.1 | |
| IL_9AZN_223 | 1/S3/925:926, 1/S3/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.1 | |
| IL_9AZN_224 | 1/S3/928:931, 1/S3/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8CRE_433 IL_15225.1 | |
| IL_9AZN_225 | 1/S3/931:935, 1/S3/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8CRE_434 IL_15225.1 | |
| IL_9AZN_226 | 1/S3/942:945, 1/S3/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.1 | |
| IL_9AZN_227 | 1/S3/952:956, 1/S3/967:974 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_9AZN_228 | 1/S3/1042:1047, 1/S3/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_31359.1 | |
| IL_9AZN_229 | 1/S3/1047:1051, 1/S3/1067:1071 | tSH-tHW-tHS | homologous IL_8CRE_438 IL_05821.1 | |
| IL_9AZN_230 | 1/S3/1091:1093, 1/S3/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_9AZN_231 | 1/S3/1098:1103, 1/S3/1129:1134 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9AZN_232 | 1/S3/1108:1110, 1/S3/1123:1124 | Minor groove platform | geometric IL_8P9A_401 IL_34520.1 | |
| IL_9AZN_233 | 1/S3/1168:1175, 1/S3/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8CRE_442 IL_84044.1 | |
| IL_9AZN_234 | 1/S3/1203:1204, 1/S3/1694:1696 | Single bulged A | homologous IL_8P9A_429 IL_14190.1 | |
| IL_9AZN_235 | 1/S3/1206:1208, 1/S3/1691:1692 | No text annotation | homologous IL_8CRE_444 IL_28408.1 | |
| IL_9AZN_236 | 1/S3/1214:1217, 1/S3/1681:1685 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_9AZN_237 | 1/S3/1230:1232, 1/S3/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.1 | |
| IL_9AZN_238 | 1/S3/1235:1236, 1/S3/1521:1523 | Minor groove platform | homologous IL_8P9A_433 IL_34520.1 | |
| IL_9AZN_239 | 1/S3/1270:1272, 1/S3/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8CRE_448 IL_01003.1 | |
| IL_9AZN_240 | 1/S3/1281:1290, 1/S3/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_9AZN_242 | 1/S3/1325:1327, 1/S3/1502:1503 | No text annotation | homologous IL_8CRE_451 IL_97561.1 | |
| IL_9AZN_243 | 1/S3/1329:1333, 1/S3/1498:1500 | No text annotation | geometric IL_8P9A_438 IL_82453.1 | |
| IL_9AZN_244 | 1/S3/1329:1335, 1/S3/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9AZN_245 | 1/S3/1333:1335, 1/S3/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_9AZN_246 | 1/S3/1337:1338, 1/S3/1488:1490 | Single bulged A | homologous IL_8CRE_455 IL_14190.1 | |
| IL_9AZN_247 | 1/S3/1347:1349, 1/S3/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.1 | |
| IL_9AZN_248 | 1/S3/1363:1365, 1/S3/1374:1375 | Minor groove platform | homologous IL_8CRE_457 IL_34520.1 | |
| IL_9AZN_249 | 1/S3/1395:1399, 1/S3/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_9AZN_250 | 1/S3/1402:1405, 1/S3/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.2 | |
| IL_9AZN_251 | 1/S3/1408:1409, 1/S3/1432:1438 | No text annotation | ||
| IL_9AZN_252 | 1/S3/1412:1413, 1/S3/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9AZN_253 | 1/S3/1537:1539, 1/S3/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.1 | |
| IL_9AZN_254 | 1/S3/1541:1550, 1/S3/1582:1592 | No text annotation | ||
| IL_9AZN_255 | 1/S3/1550:1558, 1/S3/1577:1582 | No text annotation | ||
| IL_9AZN_256 | 1/S3/1560:1562, 1/S3/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_71625.1 | |
| IL_9AZN_257 | 1/S3/1604:1610, 1/S3/1629:1635 | No text annotation | ||
| IL_9AZN_258 | 1/S3/1700:1702, 1/S3/1833:1836 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_9AZN_259 | 1/S3/1702:1705, 1/S3/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_25873.1 | |
| IL_9AZN_260 | 1/S3/1706:1708, 1/S3/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_01003.1 | |
| IL_9AZN_261 | 1/S3/1708:1711, 1/S3/1822:1826 | No text annotation | geometric IL_1CSL_001 NA | |
| IL_9AZN_262 | 1/S3/1714:1716, 1/S3/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_01003.1 | |
| IL_9AZN_263 | 1/S3/1717:1720, 1/S3/1813:1816 | Double sheared | homologous IL_8CRE_471 IL_58355.1 | |
| IL_9AZN_264 | 1/S3/1720:1722, 1/S3/1811:1813 | Single bulged U | homologous IL_8P9A_458 IL_97561.1 | |
| IL_9AZN_265 | 1/S3/1723:1726, 1/S3/1808:1810 | No text annotation | ||
| IL_9AZN_266 | 1/S3/1729:1731, 1/S3/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_71625.1 | |
| IL_9AZN_267 | 1/S3/1733:1736, 1/S3/1798:1801 | Double sheared | homologous IL_8CRE_474 IL_58355.1 | |
| IL_9AZN_268 | 1/S3/1739:1741, 1/S3/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_9AZN_269 | 1/S3/1742:1746, 1/S3/1788:1792 | Triple sheared | homologous IL_8CRE_476 IL_15190.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9AZN_001 | No text annotation | ||
| IL_9AZN_010 | No text annotation | ||
| IL_9AZN_026 | No text annotation | ||
| IL_9AZN_029 | No text annotation | ||
| IL_9AZN_034 | No text annotation | ||
| IL_9AZN_035 | No text annotation | ||
| IL_9AZN_042 | No text annotation | ||
| IL_9AZN_043 | Isolated non-canonical cWW pair | ||
| IL_9AZN_044 | Single stack bend | ||
| IL_9AZN_045 | Minor groove platform | ||
| IL_9AZN_076 | No text annotation | ||
| IL_9AZN_086 | No text annotation | ||
| IL_9AZN_096 | Tandem non-canonical cWW pairs | ||
| IL_9AZN_113 | No text annotation | ||
| IL_9AZN_114 | No text annotation | ||
| IL_9AZN_129 | No text annotation | ||
| IL_9AZN_165 | Single stack bend | ||
| IL_9AZN_166 | No text annotation | ||
| IL_9AZN_182 | No text annotation | ||
| IL_9AZN_192 | Minor groove platform | ||
| IL_9AZN_194 | No text annotation | ||
| IL_9AZN_196 | Double sheared with non-canonical cWW | ||
| IL_9AZN_199 | Single bulged A | ||
| IL_9AZN_200 | No text annotation | ||
| IL_9AZN_209 | Tandem non-canonical cWW pairs | ||
| IL_9AZN_241 | No text annotation | ||
| IL_9AZN_270 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9AZN_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_9AZN_002 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_9AZN_003 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_9AZN_004 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9AZN_005 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_9AZN_006 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_9AZN_007 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9AZN_008 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_9AZN_009 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8CRE_010 NA | |
| J3_9AZN_010 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_9AZN_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9AZN_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8CRE_014 NA | |
| J3_9AZN_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9AZN_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | homologous J3_8CRE_016 NA | |
| J3_9AZN_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_9AZN_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8P9A_087 J3_05348.1 | |
| J3_9AZN_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_9AZN_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9AZN_020 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_9AZN_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_9AZN_022 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9AZN_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_8P9A_063 J3_44047.1 | |
| J3_9AZN_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_9AZN_025 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9AZN_026 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9AZN_027 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8CRE_027 NA | |
| J3_9AZN_028 | 1/S3/40:41, 1/S3/481:487, 1/S3/512:514 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_9AZN_029 | 1/S3/40:47, 1/S3/479:487, 1/S3/512:514 | No text annotation | homologous J3_8CRE_072 J3_63856.1 | |
| J3_9AZN_030 | 1/S3/682:684, 1/S3/918:922, 1/S3/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_9AZN_031 | 1/S3/682:684, 1/S3/918:923, 1/S3/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_9AZN_032 | 1/S3/816:819, 1/S3/829:831, 1/S3/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_9AZN_033 | 1/S3/938:941, 1/S3/985:993, 1/S3/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_9AZN_034 | 1/S3/1094:1096, 1/S3/1136:1140, 1/S3/1147:1151 | No text annotation | ||
| J3_9AZN_035 | 1/S3/1218:1221, 1/S3/1645:1651, 1/S3/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_9AZN_036 | 1/S3/1225:1228, 1/S3/1530:1532, 1/S3/1638:1641 | No text annotation | homologous J3_8CRE_079 J3_44359.1 | |
| J3_9AZN_037 | 1/S3/1237:1244, 1/S3/1255:1266, 1/S3/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_9AZN_038 | 1/S3/1272:1277, 1/S3/1320:1324, 1/S3/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_9AZN_039 | 1/S3/1340:1345, 1/S3/1384:1389, 1/S3/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_9AZN_040 | 1/S3/1350:1351, 1/S3/1360:1363, 1/S3/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_9AZN_041 | 1/S3/1391:1395, 1/S3/1450:1456, 1/S3/1470:1479 | No text annotation | ||
| J3_9AZN_042 | 1/S3/1532:1536, 1/S3/1597:1604, 1/S3/1635:1638 | No text annotation | homologous J3_8CRE_086 J3_03192.1 | |
| J4_9AZN_002 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9AZN_003 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9AZN_004 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9AZN_005 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_9AZN_006 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_9AZN_007 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_9AZN_008 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_9AZN_009 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_9AZN_010 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_9AZN_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_9AZN_013 | 1/S3/98:106, 1/S3/355:357, 1/S3/405:409, 1/S3/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_9AZN_014 | 1/S3/671:673, 1/S3/1032:1037, 1/S3/1078:1089, 1/S3/1160:1161 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J4_9AZN_015 | 1/S3/685:746, 1/S3/796:800, 1/S3/865:874, 1/S3/912:917 | No text annotation | ||
| J5_9AZN_001 | 1/L5/20:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:137 | No text annotation | ||
| J5_9AZN_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_9AZN_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_9AZN_004 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3773, 1/L5/3775:3780, 1/L5/3814:3819 | No text annotation | ||
| J5_9AZN_005 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_9AZN_006 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_9AZN_007 | 1/S3/53:56, 1/S3/89:96, 1/S3/434:436, 1/S3/457:459, 1/S3/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_9AZN_008 | 1/S3/125:129, 1/S3/183:185, 1/S3/214:215, 1/S3/310:312, 1/S3/337:338 | No text annotation | ||
| J6_9AZN_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9AZN_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_9AZN_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9AZN_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9AZN_011 | No text annotation | ||
| J4_9AZN_001 | tRNA junction | ||
| J4_9AZN_012 | tRNA junction |
Coloring options: