HL_9AZN_060

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9AZN|1|L5|A|3876, 9AZN|1|L5|A|3877, 9AZN|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZN_060 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0745

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9AZN|1|L5|G|3873
9AZN|1|L5|G|3874
9AZN|1|L5|G|3875
9AZN|1|L5|A|3876
9AZN|1|L5|A|3877
9AZN|1|L5|C|3878
9AZN|1|L5|G|3879
9AZN|1|L5|G|3880
9AZN|1|L5|G|3881
9AZN|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32