HL_9AZN_089
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CAGCUGUAG
- Length
- 9 nucleotides
- Bulged bases
- 9AZN|1|PE|C|16, 9AZN|1|PE|U|18, 9AZN|1|PE|G|19, 9AZN|1|PE|U|20, 9AZN|1|PE|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZN_089 not in the Motif Atlas
- Homologous match to HL_7EQJ_004
- Geometric discrepancy: 0.1409
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 20
Unit IDs
9AZN|1|PE|C|13
9AZN|1|PE|A|14
9AZN|1|PE|G|15
9AZN|1|PE|C|16
9AZN|1|PE|U|18
9AZN|1|PE|G|19
9AZN|1|PE|U|20
9AZN|1|PE|A|21
9AZN|1|PE|G|22
Current chains
- Chain PE
- P/E site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SZ
- Small ribosomal subunit protein eS25
Coloring options: