HL_9AZN_106

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UCUCGGCCGGGGCCCGAA

Length

18 nucleotides

Bulged bases

9AZN|1|S3|G|751, 9AZN|1|S3|G|752, 9AZN|1|S3|C|753, 9AZN|1|S3|C|785, 9AZN|1|S3|G|786, 9AZN|1|S3|G|787

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|S3|U|747
9AZN|1|S3|C|748
9AZN|1|S3|U|749
9AZN|1|S3|C|750
9AZN|1|S3|G|751
9AZN|1|S3|G|752
9AZN|1|S3|C|753
9AZN|1|S3|C|785
9AZN|1|S3|G|786
9AZN|1|S3|G|787
9AZN|1|S3|G|788
9AZN|1|S3|G|789
9AZN|1|S3|C|790
9AZN|1|S3|C|791
9AZN|1|S3|C|792
9AZN|1|S3|G|793
9AZN|1|S3|A|794
9AZN|1|S3|A|795

Current chains

Chain S3

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11