HL_9AZN_125

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCGGGGUCGGCCCACGGCCCUGG

Length

23 nucleotides

Bulged bases

9AZN|1|S3|G|1760, 9AZN|1|S3|C|1762, 9AZN|1|S3|G|1763, 9AZN|1|S3|G|1764, 9AZN|1|S3|C|1765, 9AZN|1|S3|C|1766, 9AZN|1|S3|C|1767, 9AZN|1|S3|A|1768, 9AZN|1|S3|C|1769, 9AZN|1|S3|G|1770, 9AZN|1|S3|C|1773, 9AZN|1|S3|C|1774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|S3|C|1755
9AZN|1|S3|C|1756
9AZN|1|S3|G|1757
9AZN|1|S3|G|1758
9AZN|1|S3|G|1759
9AZN|1|S3|G|1760
9AZN|1|S3|U|1761
9AZN|1|S3|C|1762
9AZN|1|S3|G|1763
9AZN|1|S3|G|1764
9AZN|1|S3|C|1765
9AZN|1|S3|C|1766
9AZN|1|S3|C|1767
9AZN|1|S3|A|1768
9AZN|1|S3|C|1769
9AZN|1|S3|G|1770
9AZN|1|S3|G|1771
9AZN|1|S3|C|1772
9AZN|1|S3|C|1773
9AZN|1|S3|C|1774
9AZN|1|S3|U|1775
9AZN|1|S3|G|1776
9AZN|1|S3|G|1777

Current chains

Chain S3

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6