HL_9AZS_005
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUUUUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZS_005 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.4248
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9AZS|1|Et|G|30
9AZS|1|Et|A|31
9AZS|1|Et|C|32
9AZS|1|Et|U|33
9AZS|1|Et|U|34
9AZS|1|Et|U|35
9AZS|1|Et|U|36
9AZS|1|Et|A|37
9AZS|1|Et|A|38
9AZS|1|Et|U|39
9AZS|1|Et|C|40
Current chains
- Chain Et
- E site tRNA
Nearby chains
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sc
- 40S ribosomal protein S28
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